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Starting Your Own Medical Practice and Buying Your Own Premises

Starting Your Own Medical Practice and Buying Your Own Premises

A practical tax, cashflow and wealth comparison for Health Professionals

By Mark Churchmichael, Head of Tax & Compliance

This guide shows, in real numbers, how moving from employment into your own structured practice can change:

  • tax outcomes
  • cashflow
  • asset ownership
  • retirement wealth

It compares:

  1. An employed dentist on $250,000
  2. A dentist operating through a medical practice structure
  3. Buying premises through an SMSF using borrowings (LRBA + bare trust)

Scenario 1 – Employed Dentist

Income: $250,000 (PAYG)

Indicative 2026 tax position:

  • Income tax + Medicare levy: ~$87,000
  • After-tax income: ~$163,000

Wealth outcome:

  • No business equity
  • No asset ownership
  • No income splitting
  • No capital growth

This model provides income, not wealth creation.

Scenario 2 – Medical Practice Company + Service Trust Model

Structure (ATO-aligned)

  • Medical Practice Company (MPC) – employs the doctor, nurses and clinical staff, bills patients and insurers, carries clinical risk
  • Medical Services Trust (MST) – owns admin infrastructure, IT systems, non-clinical staff, marketing, reception, equipment, rooms, consumables and practice management systems

The MST charges the MPC a commercial service fee (with arm’s-length markup) for:

  • premises
  • equipment
  • admin staff
  • IT systems
  • marketing
  • consumables

This structure aligns with ATO guidance and case law including:

  • Phillips v FCT (1978) – legitimacy of service entity structures
  • ATO service trust guidelines

Key compliance principle: services must be real, priced commercially, and provided.

Operating Example (Fully Reconciled Numbers)

Gross practice income: $520,000

Medical Practice Company (MPC) costs:

  • Clinical consumables: $35,000
  • Insurances: $15,000
  • Clinical staff: $40,000

Total MPC direct costs: $90,000

Medical Services Trust (MST) costs:

  • Admin staff: $80,000
  • Equipment / Rent: $60,000
  • Premises/admin overheads: $30,000
  • IT, billing, systems: $20,000
  • Compliance, accounting, HR: $15,000

Total MST costs: $205,000

Service fee charged by MST to MPC (commercial, arm’s length): $215,000 (Provides MST with a modest commercial margin)

Profit Flow

MPC position before wages and super: $520,000 – ($90,000 + $215,000) = $215,000

Payments from MPC:

  • Dr Emily Carter (dentist) salary: $185,000
  • Employer superannuation: $30,000 (concessional cap)

MPC profit: $0

Employment Structure

  • Dr Emily Carter – employed by Medical Practice Company (clinical role)
  • James Carter – employed by Medical Services Trust (reception, billing, marketing, admin – non-medical role)

Tax Position (2026 rates)

Dr Emily Carter – salary $185,000 (MPC):

  • Income tax + Medicare: ~ $53,000
  • Net income: ~ $132,000

James Carter – salary $80,000 (MST, no other income):

  • Income tax + Medicare: ~ $13,000
  • Net income: ~ $67,000

Company tax:

  • Nil (no taxable profit)

Medical Services Trust position:

  • Service fee income: $215,000
  • Costs: $205,000
  • Trust profit: $10,000 (distributed to university-aged children at no tax)

Family Cashflow Outcome from running own practice

Dr Emily Carter net income: $132,000

James Carter net income: $67,000

Trust income (children): $10,000 (below tax threshold)

Total family cashflow: $209,000

Compared with $163,000 net employed income with Gross fees to accelerate in future years, the benefit increases.

Result: Higher income + lower effective tax + asset creation + control. Income can scale up greatly in subsequent years. Employed income is limited. Potential to sell business in the future. Cannot see your employment income.

Buying Premises Through an SMSF

Structure

  • SMSF establishes a bare trust
  • Property purchased via LRBA (limited recourse borrowing)
  • SMSF is beneficial owner
  • Loan secured only over the property

Example: Practice Premises Purchase

Purchase price:$2,000,000

SMSF deposit (30%):$600,000 (existing super balance)

SMSF loan:$1,400,000

Interest rate:7%

Annual rent (market): $140,000

SMSF Cashflow

Rental income:$140,000

Less interest:$98,000

Net income: $42,000

Tax in SMSF (accumulation @ 15%):$6,300

After-tax SMSF cashflow: $35,700 p.a.

As loan reduces:

  • interest falls
  • net income rises
  • tax efficiency improves

Retirement Comparison

Property owned personally

  • Rent taxed at marginal rate (up to 47%)
  • Capital gains tax on sale
  • Income fully taxable

Property owned in SMSF

  • Rent taxed at 15% (accumulation)
  • Rent taxed at 0% in pension phase
  • Capital gains tax potentially 0% in pension phase
  • Asset produces tax-free retirement income

Long-term outcome comparison

Article content

The Compounding Effect

Renting rooms:

  • $140,000 p.a. × 20 years = $2.8m paid
  • No asset
  • No capital growth
  • No retirement income

Owning via SMSF:

  • Same rent
  • Asset retained
  • Capital growth
  • Tax-free pension income

Advisory Note

These structures require:

  • correct ATO compliance
  • commercial lease terms
  • arm’s length pricing
  • LRBA compliance
  • specialist structuring advice

Stewart & Smith Advisory

We specialise in:

  • medical and dental practice structuring
  • SMSF property strategies
  • professional services business models
  • retirement and succession planning

The structure you choose at the start determines the outcome at retirement.

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